Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQATYASISLPGISSVEDVLEDARFGKLFILVDDENRENEGDLIVLAEKLKPEHVAFMVRYGTGIVFLAMTRLHMGRLGLEFMRRSNIDEKLTPHTAFTTSIDARYGIATGVSAHDRTHTILTAIDGKSTQDDIITPGHVFPIIANDGGVLARNGHTEASVEIAKLIGYNHAAVGCELVN--DDGSMMRLPELLKFAEQHNIKLTTIDKLIRYIKKLS
3MIO Chain:A ((4-204))
-------------LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMY--------------TVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE
General information:
TITO was launched using:
RESULT:
Template:
3MIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127670 for 1616 contacts (-79.0/contact) +
2D Compatibility (PS) -20495 + (NN) -6435 + (LL) 1712
1D Compatibility (HY) -12800 + (ID) 4600
Total energy: -170288.0 ( -105.38 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_3MIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MIO-query.scw
PDB file :
Tito_Scwrl_3MIO.pdb
: