Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------MIHVAIYMLLLCMSAMLYRIAKLSDIYNKALAFNH-FSTQVILLITAVSIILDSFFLVDIAL-------------LYASVSFISTIALMRLMLL
1L0V Chain:D ((1-119))
MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI
General information:
TITO was launched using:
RESULT:
Template:
1L0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49306 for 430 contacts (-114.7/contact) +
2D Compatibility (PS) -8265 + (NN) -3101 + (LL) 0
1D Compatibility (HY) -8800 + (ID) 750
Total energy: -70222.0 ( -163.31 by residue)
QMean score : 0.182
(partial model without unconserved sides chains):
PDB file :
Tito_1L0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L0V-query.scw
PDB file :
Tito_Scwrl_1L0V.pdb
: