Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKDPVLNAVTFLMVPLIILFALYIQFHGDYTPGGGFQAGIIIASGIILYSMLFGVSTTLKAIPYSAIKFTSMLGI-FIYGGTGIATVLLGQNFLSYDILLANNVAGQKLGIFLVELGVALTVCSSMLIIYIDFARRKK
4AMT Chain:A ((133-196))
-----------------------------------GFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIF-DNIISQGVLKEDVFSFYYNRDLGGQIVLGGSDPQHYEGNFHYINLIKT
General information:
TITO was launched using:
RESULT:
Template:
4AMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40908 for 326 contacts (-125.5/contact) +
2D Compatibility (PS) -6362 + (NN) 970 + (LL) 2548
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -49552.0 ( -152.00 by residue)
QMean score : -0.189
(partial model without unconserved sides chains):
PDB file :
Tito_4AMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AMT-query.scw
PDB file :
Tito_Scwrl_4AMT.pdb
: