Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMNKKLTENKKPLVDKEDKKTPPVKGFTKKNKSRRDFITLTTCAMASIGTVSGLWPLIKSMNPSAEVLAMSTVEVNLSGIQEGHGIKVKWQGKPVFIRRRTKQEIKAARVVNVEDLRDPQSDEQRVHKGKD-EWLIMVGVCTHLGCVPVEHATKDGNGWFCPCHGSYYDTSGRVIGGPAPKNMVVPDYFFPNENVVVIGKKA
4PD4 Chain:E ((21-184))----------------------------KGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRV---KDPQWLIMLGICTHLGCVPIGEA-GDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEFDGDKVIVG----


General information:
TITO was launched using:
RESULT:

Template: 4PD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		3D Compatibility (PKB) -50388 for 1087 contacts (-46.4/contact) +
2D Compatibility (PS) -17400 + (NN) -3198 + (LL) 1260
1D Compatibility (HY) -15600 + (ID) 4300
Total energy: -89626.0 ( -82.45 by residue)
QMean score : 0.386

(partial model without unconserved sides chains):
PDB file : Tito_4PD4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4PD4-query.scw
PDB file : Tito_Scwrl_4PD4.pdb: