Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLPGNIEL--NSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERT---HETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKSRLPIHGEYT---VAYEPIWAIGTGHVPSNNAIAEVIEVIQSYTSKK---------HVIYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
7TIM Chain:A ((3-235))
-TFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIINSRN----
General information:
TITO was launched using:
RESULT:
Template:
7TIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118265 for 1773 contacts (-66.7/contact) +
2D Compatibility (PS) -23494 + (NN) -7854 + (LL) 288
1D Compatibility (HY) -14000 + (ID) 4050
Total energy: -167375.0 ( -94.40 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_7TIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-7TIM-query.scw
PDB file :
Tito_Scwrl_7TIM.pdb
: