Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAKRKVVIYIKQYCPFCKRAKELLDEKGVK---YEEIDVFK---NSDLFSNIKLKYNVRTVPQIFIADKNGNYVHHIAGCDKLMDLEREGKLDDMLSTNYDKTDVTTYTSNSDEYEEYVASHDDFM
1JHB Chain:A ((14-95))
------KVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGK------DCIGGCSDLVSLQQSGELLTRLKQIGALQ-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1JHB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60494 for 537 contacts (-112.7/contact) +
2D Compatibility (PS) -7860 + (NN) -1574 + (LL) 1172
1D Compatibility (HY) -8000 + (ID) 1400
Total energy: -78156.0 ( -145.54 by residue)
QMean score : 0.750
(partial model without unconserved sides chains):
PDB file :
Tito_1JHB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JHB-query.scw
PDB file :
Tito_Scwrl_1JHB.pdb
: