Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTINWQAKDPEGNSINCSMTVKVGSGGIQSATGGFGVSKFKSPLPEGKKSEILKLVEQN------KEVF-ISGKTLYKAFTDVGQSVDD
3VCO Chain:A ((108-142))
-----------------------------------------------SLNAAIDLLYNEEFSSIVDEVFIIGGYRLYKEALKQSIYPVR
General information:
TITO was launched using:
RESULT:
Template:
3VCO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1315 for 105 contacts (-12.5/contact) +
2D Compatibility (PS) -3118 + (NN) -590 + (LL) 1124
1D Compatibility (HY) -2400 + (ID) 450
Total energy: -6749.0 ( -64.28 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_3VCO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VCO-query.scw
PDB file :
Tito_Scwrl_3VCO.pdb
: