Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKRNNFNDSYVSVNNRTGFKRSKVCPLATSQDEDIDYKNTDLLSRFTSDYGRILPRRLTGVCAKKQRKLRLAIIRARFLALVPYCTKKV
4DR3 Chain:R ((33-86))
-------------------------------------DYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLV
General information:
TITO was launched using:
RESULT:
Template:
4DR3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16620 for 309 contacts (-53.8/contact) +
2D Compatibility (PS) -5920 + (NN) -3636 + (LL) 1604
1D Compatibility (HY) -3600 + (ID) 1450
Total energy: -29622.0 ( -95.86 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_4DR3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR3-query.scw
PDB file :
Tito_Scwrl_4DR3.pdb
: