Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIPRYSRKEISAIWEENNKFNIWLKIERLACEAQAKLG--VIPSNVAKRLSGAITFDVERINEIESTVKHDVIAFLTYIAEKVGVDVRYLHYGMTSSDVLDTCFAVQLKESCNILLENLKNLLAALKKKAEDYKGTICVGRSHGMHAEPTTLGLKFTRFYAEFKRSYQRLINAQKEISICKISGAVGNFANVDPFVE---EYVAKGMELVPET--------ISSQVIPRDRHAMFFSVLGVIASSMENVAVEIRHLQRTEIAEIAEYFSTGQKGSSAMPHKCNPILSENLTGLSRLIRSYVSPALENV-VLWHERDISHSSVERCIAPDACILMDFALVRLTDLIDKLAINKENIEKNLNSSKGLIFSQRILLELVNSGLTREEAYKII----QGNAMKVKQNNSDF-LFELKQDRSLLEVINSEKLESLFDLKYYTKYVDHIYKKVFD |
2VD6 Chain:A ((42-472)) | ---RYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLL--ANLKEMEEPFE---------PYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQ-LDHLLDPSSFTGRASQQVQRFLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VD6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206621 for 3162 contacts (-65.3/contact) +
2D Compatibility (PS) -42721 + (NN) -13668 + (LL) 744
1D Compatibility (HY) -20000 + (ID) 5050
Total energy: -287316.0 ( -90.87 by residue)
QMean score : 0.483
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