Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPSVTFILPDGSKKSYEAAEGETLLNLAHRSDPDLLEGACEGSLACSTCHVIIDQNFYDAVETHNPISDEENDMLDLAFSLTETSRLGCQIKITKDIDGLCVTIPKGTRNISLDKQGND
2Y5C Chain:A ((7-109))
--NVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDL-EGACEASLACSTCHVYVSEDHLDLLP---PPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR----------
General information:
TITO was launched using:
RESULT:
Template:
2Y5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68200 for 776 contacts (-87.9/contact) +
2D Compatibility (PS) -11757 + (NN) -8338 + (LL) 312
1D Compatibility (HY) -8800 + (ID) 2400
Total energy: -99183.0 ( -127.81 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_2Y5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y5C-query.scw
PDB file :
Tito_Scwrl_2Y5C.pdb
: