Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMKITISKVLPDFETLVVGLFEDGELVSNGKVLQDKQIINSIKKFSHFNGGFGEFFSVTLSDGKNVIIVGLGKR-------DEWNENKE-LSVGGKIYC-ELGRLKIKQATVSIEGSAENIAYGAFLRSFKFDKYKTKKDEEITEVEEIMVLAKDEQLNDAEKSFEHLRQEGEGIFLARTFITEPPNVLYPESYADCIKSELTKFGLEIEVL--DKKQMEKKKMGALLGVAQGSSKEPKLVVIRWNGA-SKEQKPIAFVGKGITFDTGGVSLKPSRGMESMKYDMAGSAAVVGVMRTLAGRKARINAVGVVALAENAIDGNAQRPSDVVTSMSGQTIEVLNTDAEGRLVLADALWYTQDRFAPEFMIDLATLTGAIVVALGNNEYAGLFSNNDELANRLVEAGNEANEKLWRFPMNETYDK-IIDSPIADVQNIAPTGSGGDSIMAAQFLQRFVNDTCWAHLDIAGTAWHEKGTDISPKGAVGFGVRLLNKLVEKYYETSD |
2EWB Chain:A ((60-486)) | -------------------------------------------------------------DFPSVVVVGLGKKTAGIDEQENWHEGKENIRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKR--------KVVVSAKLHGSEDQE-AWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHT-FNPKVIINAATLTGAMDIALGSGA-TGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAG-ACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLFRFSQDS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2EWB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180048 for 3985 contacts (-45.2/contact) +
2D Compatibility (PS) -44664 + (NN) -21626 + (LL) 4892
1D Compatibility (HY) -28400 + (ID) 7900
Total energy: -277746.0 ( -69.70 by residue)
QMean score : 0.521
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