Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEERYSTKRITVKEIDEILYEEHRVLDHGFIRVVDYMGSDSAIVQAARVSYGKGTKQINQDEVLIKYLMRYHHTTPFEMCEIKFHVKLPIFIARQWIRHRTANVNEYSARYSILDHEFYIPEPEQVAKQSDNNKQGSGEAFDLDISKEIIDSLIND-SNLVYSHYNKFIEQGLTREIARTNLTLNYYTQFYWKVDLHNLLHFLKLRADKRAQHEIRVYAEVILDIVKKWVPLVHSAFVEYCLESACISRTGLGIIRKLIRGENVTREESNIGKREWEELMFILDKQPER
4GTB Chain:A ((17-221))
-------------------------ILDKGFVELVDVMGNDLSAVRAARVSFD-----EERDRHLIEYLMKHGHETPFEHIVFTFHVKAPIFVARQWFRHRIASYNELSGRYSKLSYEFYIPSPERL------------EGYKTTIPPERVTEKISEIVDKAYRTYLELIESGVPREVARIVLPLNLYTRFFWTVNARSLMNFLNLRADSHAQWEIQQYALAIARIFKEKCPWTFEAFLKYAYKGDILK-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4GTB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158542 for 1481 contacts (-107.1/contact) +
2D Compatibility (PS) -20802 + (NN) -1576 + (LL) 5736
1D Compatibility (HY) -19200 + (ID) 4800
Total energy: -199184.0 ( -134.49 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_4GTB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GTB-query.scw
PDB file :
Tito_Scwrl_4GTB.pdb
: