Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAEEINIMNDFTNNNNSSDSSIFQGKICPEDLNKAQEVNELKGVTEELFKKIELQKQEYEGLGKEASSEIQGMFTPVMLGDDNPTDGGIVEETLAELGKFFQSLLSEFEIELDPKTYEMINGKREKNWLAAIIKFLHDKLKELVEKVFSCDLSFDERVDKEIKELEEKLLSGGFSKEEEVAVLGKLEALRELKLKLQMAVAGWIVAMVAEIFAVELVVAAEGTGTAKEEDKKAEKTSSKKEVEVCKEIGIKVGED-EKLRI-LPISLFLIPARGQSNRLIIPPLKPEEQNLLRDSLKKMI--HGPEHDVNRENCEVKETKVEENKQVEELIAVRPTASGQPATNSMELKDTQRDNSDWKEMKGQGKNNTCKKTLRQSNRGFVSNDNTSRRPAQSSVFSRETPEQLAQEYVFNGEASTQHATKSVSNRGSSGQPMKGSVVGSEYDFSTWSNAEYEAQQSSVNNAQPTSECNDVKVNNHVNSMGRAQGEAQSR |
| 4PK4 Chain:A ((364-439)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KNKSTQALEYCAEL---LGLDQDDLRVSLTTRVM-----------IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -8177 for 277 contacts (-29.5/contact) +
2D Compatibility (PS) -6405 + (NN) -1586 + (LL) 18816
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -2652.0 ( -9.57 by residue)
QMean score : 0.468
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