Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYQYYNRIFNILLIIVLLLSNVTYADASESMHQIGSDIVVGLLKTEKETYPHELGLFQSIYEMFNSFG----VRTVFIDCNKIINLKKIQEELLSLLKQDEMLAKKLILDRIKIEIGQFIKGHKINRIFIPENYYNLHSEPFPPTPCCQLVTEAIVKIVDDNPTIHLLSICGGLQGIMSAKGIEVVHVENFVSDEEQRRSHLKSAP----NP--------QQE-DVTFQQIKIVPNSHLAKVVAKFLLPDKNGWFSTCFPDAH--SGTVNNRPENRRKLELLGYKIAAFSNDG-VIEAIEDK-HG-NIYFQSHPEALVVKSDKNLHLSNHKARQVSTLVAMAIINDFLYRA |
| 2V4U Chain:A ((296-534)) | ----------------------------------MKICSIALVGKYTKLRD----CYASVFKALEHSALAINHKLNLMYIDSIDLE-----------KITE-TEDPVK----FHEAWQKL--CKADGILVPGGF-GIRGT---------LGKLQAISWARTK-KIPFLGV-LGMQLAVIEFARNCLNLKDADSTEF---RPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYG----------DVPFIEERHRHRFEVN--PNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPM------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V4U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66050 for 1652 contacts (-40.0/contact) +
2D Compatibility (PS) -22430 + (NN) 1346 + (LL) 8768
1D Compatibility (HY) -4400 + (ID) 1900
Total energy: -84666.0 ( -51.25 by residue)
QMean score : 0.400
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