Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE
1NXW Chain:A ((2-119))
--KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRS-----------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NXW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80570 for 953 contacts (-84.5/contact) +
2D Compatibility (PS) -13181 + (NN) -9735 + (LL) 8264
1D Compatibility (HY) -14000 + (ID) 3650
Total energy: -112872.0 ( -118.44 by residue)
QMean score : 0.721
(partial model without unconserved sides chains):
PDB file :
Tito_1NXW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NXW-query.scw
PDB file :
Tito_Scwrl_1NXW.pdb
: