Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYDDFIVGETFKTKSLHITEEE-IIQFATTFDPQYMHIDKEKAEQSRFKGIIASGMHTLSISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAEITNKKSIKKENGL--VTVSLSTYNENEEIVFKGEVTALINNS
4FFU Chain:A ((31-162))
--YEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHMDAEFAKTLPGGQRIAHGTMIFSIGVGLTA---SLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAAD--------
General information:
TITO was launched using:
RESULT:
Template:
4FFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37500 for 840 contacts (-44.6/contact) +
2D Compatibility (PS) -13801 + (NN) -1285 + (LL) 888
1D Compatibility (HY) -2000 + (ID) 1650
Total energy: -55348.0 ( -65.89 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_4FFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FFU-query.scw
PDB file :
Tito_Scwrl_4FFU.pdb
: