Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTTTQELKQYITRLFQLSNNETWECEALEEAAENILPERFINDSPLAHLTLETYTYYNNELHDLSIYPFLMYANNQLISVGYLNHFDMDFLYLT---DTKNTIIDERHLLREGGTHHE
4AP3 Chain:A ((351-416))
----------------------------------------------------ETYNRDNVELVDLRSTPIVGMDETGIVTTG--AHYDLDMIVLATGFDAMTGSLDKLEIVGRGG----
General information:
TITO was launched using:
RESULT:
Template:
4AP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17128 for 213 contacts (-80.4/contact) +
2D Compatibility (PS) -5698 + (NN) 3326 + (LL) 5028
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -19372.0 ( -90.95 by residue)
QMean score : 0.008
(partial model without unconserved sides chains):
PDB file :
Tito_4AP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AP3-query.scw
PDB file :
Tito_Scwrl_4AP3.pdb
: