Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNDMLISLVIPVFALLVIGGIIWVIIEGIVHISKKNKAIDNFLNQVNKVSETYKFATAFLFLILATAGISQFYLYYIVSAFLFWLVILTFGIAGIIFLMPYGLCFLPLYKQKKKKQTFKKYMVYTTIGLSICLGLSLVLVHTTKIYMDEGGVRYYYGSFVMKQAGGYAYLALAVLSTLLIVAKKATNKNKEIETVDNTNITER |
2W0C Chain:T ((12-45)) | --------------ILAAGVGVWFY-----------QKADNAAKTATK---PIADFLAELQF--------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2W0C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4845 for 116 contacts (-41.8/contact) +
2D Compatibility (PS) -3209 + (NN) 2707 + (LL) 15072
1D Compatibility (HY) 400 + (ID) 400
Total energy: 9725.0 ( 83.84 by residue)
QMean score : 0.119
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