Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MSKIRSFTILSLLIYLAMM--CYTVVTYSKLPTKVPIHYNLAGDADNF-----ADKWVLLLINSAFIVI-----WLIFFIAGRYYERFAKWSH---------YNHTPREIR-AIKLFLSTLNLEIMSYMSIFTVLEI----WQIQHHHQLNLLWFNMIFIIIIGLTLVIFCLLPTIHKMRDSQ-------------
1UXY Chain:? ((1-198))
HSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTT
General information:
TITO was launched using:
RESULT:
Template:
1UXY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -197627 for 1210 contacts (-163.3/contact) +
2D Compatibility (PS) -15860 + (NN) 10556 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -207831.0 ( -171.76 by residue)
QMean score : 0.076
(partial model without unconserved sides chains):
PDB file :
Tito_1UXY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UXY-query.scw
PDB file :
Tito_Scwrl_1UXY.pdb
: