Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQMYYAMKANSERTILDTISQYVEGFEVASQGEI----AKGLAFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALVMPNIHLDGFHFHSISNNLDSNLHVDVVKLYFKKAKSWSEKHRFPLKHINLGGGIGVNYADLTSQ-FEWDNFVENFKTLIVEQEMEDVTLNFECGRFIVAHIGYYVTEVLDIKKVHGA-WYAILRGGTQQFRLPVSWQHNHPFEIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAISTGDVIVFKYAGAYGWSISHHDFLSHPHPEFIYLTQTKEDE |
2PLK Chain:A ((45-396)) | --LIEASVEQFGA---PL--LLLDCDVIRQQYRALKNALP-NVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELVASEGV---PADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVE----LLVRLS----F-----------KKFGCSPEQALVIIETAKEW-NIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNY---TQQVMPIDQFCAPINEAL-SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSF-------SGLMFDDARY---PLTTIKQGGELIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAY-TSATATDF------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PLK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227037 for 2818 contacts (-80.6/contact) +
2D Compatibility (PS) -35785 + (NN) -9962 + (LL) 3172
1D Compatibility (HY) -20400 + (ID) 4700
Total energy: -294712.0 ( -104.58 by residue)
QMean score : 0.436
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