Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLQLKKWKCRENDIEAVHNNKGYAYQRKLDALEEVRKGYYPIKRAIDLVLSIVLLFLTFPIMFIFAIAIVIDSPGNPIYSQVRVGKMGKLIKIYKLRSMCKNAEKNGAQWADKDDDRITNVGKFIRKTRIDELPQLINVVKGEMSFIGPRPERPEFVELFSSEVIGFEQRCLVTPGLTGLAQIQGGYDLTPQQKLKYDMKYIHKGSLMMELYISIRTLMVVITGEGSR |
3NWR Chain:A ((105-118)) | ------------------------------------------------------------------------------------------------------------------------------------ANLPTLAATVAGNLYD---------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NWR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -563 for 49 contacts (-11.5/contact) +
2D Compatibility (PS) -1391 + (NN) 209 + (LL) 16152
1D Compatibility (HY) -800 + (ID) 250
Total energy: 13357.0 ( 272.59 by residue)
QMean score : 0.388
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