Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYAPHTAENVVQNANKLIDVFRKNNGFIAFVRVNFYDGKDVLQPNAMISLPPKEGDDYSRFHHLLDKRDDDFVIDKRHFSAFVGTDLDLQLRRRGIDTIVLGGVATHIGVDTTARDAYQLNYNQFFVTDMMSAQNETLHQFPIDNVFPLMGQTITTNDFLNILN
3EEF Chain:A ((20-148))
---ATPEAMKTVGPARKVIETFRRSGLPVVYVNDSHYPDDPEIR---IWGRHSMKGDDGSEVIDEIRPSAGDYVLEKHAYSGFYGTNLDMILRANGIDTVVLIGLDADICVRHTAADALYRNYRIIVVEDAVAAR------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3EEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56927 for 890 contacts (-64.0/contact) +
2D Compatibility (PS) -13790 + (NN) -6117 + (LL) 1852
1D Compatibility (HY) -9600 + (ID) 2150
Total energy: -86732.0 ( -97.45 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_3EEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EEF-query.scw
PDB file :
Tito_Scwrl_3EEF.pdb
: