Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKEQQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVIHDERIQVVVGPGTVNKVANHMAELSGVKLGDPIPHHHNDSEKMDYKSYAADKAKANKEAHKAKQKNGKLNKVLKSIANIFIPLIPAFIGAGLIGGIAAVLSNLMVAGYISGAWITQLITVFNVIKDGMLAYLAIFTGINAAKEFGATPGLGGVIGGTTLLTGIAGKNILMNVFTGEPLQPGQGGIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPTIALLIVG-LLTIFIFMPLAGFVSDS--LVSVVNGIISIGGVFSGFIIGASFLPLVMLGLHHIFTPIHIEMINQSGATYLLPIAAMAGAGQVGAALALWVRCKRNTTLRNTLKGALPVGFLGIGEPLIYGVTLPLGRPFLTACIGGGIGGAVIGGIGHIGAKAIGPSGVSLLPLISDNMYLGYIAGLLAAYAGGFVCTYLFGTTKAMRQTDLLGD |
| 3NCY Chain:A ((227-362)) | ---------------------------------------------------------------------------------------------------------------------------------------------ATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPF-----GDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK------------AAADDGLFPPIFA---------R-------------TPVAGLLIVGVLMTIFQFSSMSPNAAKEFGLVSSVSVIFTL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -33598 for 638 contacts (-52.7/contact) +
2D Compatibility (PS) -11880 + (NN) 6996 + (LL) 23064
1D Compatibility (HY) -6800 + (ID) 2450
Total energy: -24668.0 ( -38.66 by residue)
QMean score : -0.260
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