Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLHKKIAWTGIKGSAITTFITALYNGSSVWNALAVAGIAFGGGAGTAVAALGRATVMRFIKRWGVRKTAAW
3B9W Chain:A ((28-46))
---------------------------------------------------LVGFGFLMVFVRRYGFSAT---
General information:
TITO was launched using:
RESULT:
Template:
3B9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2236 for 84 contacts (26.6/contact) +
2D Compatibility (PS) -1726 + (NN) 2688 + (LL) 4000
1D Compatibility (HY) -2800 + (ID) 300
Total energy: 4098.0 ( 48.79 by residue)
QMean score : -0.376
(partial model without unconserved sides chains):
PDB file :
Tito_3B9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3B9W-query.scw
PDB file :
Tito_Scwrl_3B9W.pdb
: