Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTLLNVDRVNKQYKDSDFKLQDASLTISTNETVGLIGKNGSGKSTLINILVGNRHKDNGSIAFFGEE---HAADDVEYKEHIGVVFDDLRVPNKLTIKDIDKVFQSI-YTTWNSQKFFDLIKY----------FELPLQTKIKTFSRGMRMKIALTIALSHDVKLLILDEATAGMDVSGREEVMELLEDFVAQGG-GILISSHISEDIEQLADKLVFMKDGRMILTEQKDILLAQYGIVTTGDKDVEIPKHLIIASRLSKGKYQILVKDYAEIENAEPLKHIDDATKIIMRGEV |
3GFO Chain:A ((7-238)) | ---ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQD---PDNQLFSA--SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVI------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3GFO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -117035 for 1619 contacts (-72.3/contact) +
2D Compatibility (PS) -22919 + (NN) -6183 + (LL) 5008
1D Compatibility (HY) -14800 + (ID) 3200
Total energy: -159129.0 ( -98.29 by residue)
QMean score : 0.414
|
|
|