Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLAEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRENK
2NM2 Chain:A ((1-121))
MQDTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRENK
General information:
TITO was launched using:
RESULT:
Template:
2NM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55440 for 888 contacts (-62.4/contact) +
2D Compatibility (PS) -13027 + (NN) -5029 + (LL) 0
1D Compatibility (HY) -17200 + (ID) 6000
Total energy: -96696.0 ( -108.89 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_2NM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NM2-query.scw
PDB file :
Tito_Scwrl_2NM2.pdb
: