Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKRMRDDIKMVFEQDPAARSTLEVITTYAGLHAVWSHLIAHKLYNQ-KKYVAARAISQISRFFTGIEIHPGAKIGKRLFIDHGMGVVIGETCTIGDNVTIYQGVTLGGTGKERGKRHPDIGDNVLIAAGAKVLGNIKINSNVNIGANSVVLQSVPSYSTVVGIPGHIVKQDGVRVGKTFDHRHLPDPIYEQIKHLERQLEKTRNGEIQDDYII
1T3D Chain:A ((100-260))
-------DIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQ-VDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIV---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1T3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135711 for 1317 contacts (-103.0/contact) +
2D Compatibility (PS) -17274 + (NN) -6201 + (LL) 3388
1D Compatibility (HY) -11200 + (ID) 3700
Total energy: -170698.0 ( -129.61 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1T3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T3D-query.scw
PDB file :
Tito_Scwrl_1T3D.pdb
: