Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPIKEQEVIDLLASFEHKPVYLHVETTNGAYANHFDQRVFNAGTFLRNIQVTYTHAQLKGGNKEPYRIG----------LKLSNGGWVYVQGLTHFEVNEHDEFLIAGFNYEGQLAAALQISERPFNL
2VNM Chain:A ((56-141))
--------------------------------------------------QLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPQVTVRA-NIAAITESDKFFIQGSNWEGILGLAYAEIARP---
General information:
TITO was launched using:
RESULT:
Template:
2VNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106 for 249 contacts (-0.4/contact) +
2D Compatibility (PS) -6452 + (NN) 1802 + (LL) 4236
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -4420.0 ( -17.75 by residue)
QMean score : -0.158
(partial model without unconserved sides chains):
PDB file :
Tito_2VNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VNM-query.scw
PDB file :
Tito_Scwrl_2VNM.pdb
: