Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------MYFVLAIFTIISAS--VSLGYSIQACAS------SHNINAYYALSRSLPLFLLAIFSLVIHS------AIFLITIS-------------IAMILVQFLDAIVGYKSEDVFKTYGPLATSVVNLILLIVFLF-
4QXA Chain:B ((9-179))
ATLLYGKNNVLVQPRDDMEAVPGYLSLHQTADVMTLKWTPNQLMNGSVGDLDYEKSVYWDYAVTIR--LEEIVYLHCHQQVDSGGTVVLVSQDGIQRPPFRFPKGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVATDYVFRIIYP
General information:
TITO was launched using:
RESULT:
Template:
4QXA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101692 for 601 contacts (-169.2/contact) +
2D Compatibility (PS) -11152 + (NN) -1705 + (LL) 308
1D Compatibility (HY) -6400 + (ID) 550
Total energy: -121191.0 ( -201.65 by residue)
QMean score : 0.247
(partial model without unconserved sides chains):
PDB file :
Tito_4QXA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QXA-query.scw
PDB file :
Tito_Scwrl_4QXA.pdb
: