Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVELP----YIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSDIEGLKRLATAMKKNGAKALVQIHHGGAQALPELIPDGDVVAPSPISLKSFGQKQEHSA---------REMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWA----NQYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSP-----EEAES-PGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK |
1VJI Chain:A ((23-349)) | -------------------LSHRVVLAPLTRQRS-----YGNVPQPHAAIYYSQRTTPGGFLITEATGVSDTAQGYQDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNSGFQPNGK--APISCSDKPLMPQIRSNGIDEALFTPPRRLGIEEIPGIVNDFRLAARNAMEAGFDGVEIHGANGYLIDQFMKDTVNDRTDEYGGSLQNRCKFPLEIVDAV--AKEIGPDR---VGIRLSPFADYMESGDTNPGALGLYMAESLNKYG---ILYCHV--IEARM----------HTLMPMRKAFKGT--FISAGG-FTREDGNEAVSKGRTDLVAYGRWFLANPDLPKRFQ---VDAPLNKYD----------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VJI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -124821 for 2539 contacts (-49.2/contact) +
2D Compatibility (PS) -31596 + (NN) -16259 + (LL) 3228
1D Compatibility (HY) -19200 + (ID) 5400
Total energy: -194048.0 ( -76.43 by residue)
QMean score : 0.535
|
|
|