Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPD-DGSGKSYDY--MLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV
3SW8 Chain:P ((13-193))
LIDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNI----EAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPF---------
General information:
TITO was launched using:
RESULT:
Template:
3SW8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80218 for 1320 contacts (-60.8/contact) +
2D Compatibility (PS) -17774 + (NN) -3048 + (LL) 184
1D Compatibility (HY) -19600 + (ID) 4700
Total energy: -125156.0 ( -94.82 by residue)
QMean score : 0.729
(partial model without unconserved sides chains):
PDB file :
Tito_3SW8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SW8-query.scw
PDB file :
Tito_Scwrl_3SW8.pdb
: