Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFP--DALFIFLAPPSLDHLRERLVGRGTESNEKIQSRINEARKEVEM--MNLYDYVVVNDEVELAKNRIQCIVEAEHLKRERVEAKYRKMILEAKK
1GKY Chain:A ((4-185))
--------IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSV-KAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIFAE--------------------
General information:
TITO was launched using:
RESULT:
Template:
1GKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60701 for 1291 contacts (-47.0/contact) +
2D Compatibility (PS) -19567 + (NN) -8164 + (LL) 2812
1D Compatibility (HY) -12800 + (ID) 3900
Total energy: -102320.0 ( -79.26 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_1GKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GKY-query.scw
PDB file :
Tito_Scwrl_1GKY.pdb
: