Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNKDDVLKQADNIANKIKN-----LDTI-KTYQQIE------------AQIHQNQTIKTKMDMLKKHQKQAVNFQNYGKQNALEQSEHTIQSIEAEINTLPIVEQFQTSQYEANQLLKMFVSTMETRLNDHNKAKHSD
3PFV Chain:A ((18-102))
----DKVVRLCQNPKLQLKNSPPYILDILPDTYQHLRLILSKYDDNQKLAQLSENEYFKIYIDSLMKKSKRAIRLFKEGKERMYEEQSQ--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3PFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7007 for 316 contacts (22.2/contact) +
2D Compatibility (PS) -7296 + (NN) -4292 + (LL) 4428
1D Compatibility (HY) -4400 + (ID) 1100
Total energy: -5653.0 ( -17.89 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3PFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PFV-query.scw
PDB file :
Tito_Scwrl_3PFV.pdb
: