Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKEYSATLMTSFFV--DKNPLTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEKGWI
1RNL Chain:A ((6-205))
-ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASL---QLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEA----------
General information:
TITO was launched using:
RESULT:
Template:
1RNL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86449 for 1468 contacts (-58.9/contact) +
2D Compatibility (PS) -20013 + (NN) -9094 + (LL) 820
1D Compatibility (HY) -14000 + (ID) 2700
Total energy: -131436.0 ( -89.53 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1RNL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RNL-query.scw
PDB file :
Tito_Scwrl_1RNL.pdb
: