Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTILAEIVKYKQSLLQNGYYQDKLNTLKSVKIQNKKSFINAIEKEPKLAIIAEIKSKSPTVNDLPE-RDLSQQISDYEKYGANAVSILTDEKYFGGSFERLQALTTKTTLPVLCKDFIIDPLQIDVAKQAGASMILLIVNILSDKQLKDLYNYAISQNLEVLIEVHDRHELERAYKVNAKLIGVNNRDLKRFVTNVEHTNTILENKKPNHHYISESGIHDASDVRKILHSGIDGLLIGEALMRCDNLSEFLPQLKMQKVKS
3T40 Chain:A ((43-246))
--------------------------------------VMAALREPGIGVIAEVKR---------TIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNAR-----DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLV-------------------
General information:
TITO was launched using:
RESULT:
Template:
3T40.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124103 for 1587 contacts (-78.2/contact) +
2D Compatibility (PS) -20148 + (NN) -4778 + (LL) 5016
1D Compatibility (HY) -12000 + (ID) 3300
Total energy: -159313.0 ( -100.39 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_3T40.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T40-query.scw
PDB file :
Tito_Scwrl_3T40.pdb
: