Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLTIFQHPLTS-----FNPDWTIETSLKEALYYYR-GLTDNTAQDQLLLQHLSTF-----ELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNV----INILKAQTITNLNHFIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQTFSY
4Q4A Chain:B ((355-569))
-IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKT------SIIIAHRLNTIKN-ADLIIVLRDGEIVE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
4Q4A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131990 for 1435 contacts (-92.0/contact) +
2D Compatibility (PS) -21382 + (NN) -3200 + (LL) 2708
1D Compatibility (HY) -15200 + (ID) 3500
Total energy: -172564.0 ( -120.25 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_4Q4A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q4A-query.scw
PDB file :
Tito_Scwrl_4Q4A.pdb
: