Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPVFELKNVNYYYDHKKVLENINIKINKGEFLAIVGPNGAGKSTLLKLILGLLPLQSGEIFVEGIDFKNKKTSIKLSYVSQKANA----FNSGFP--ASVKEVVLSGLTKTKRLFQTFNSKDNEKV-IKVLERLNISDLIHKNIAELSGGQQQRVMIARALISEPAVLVLDEPTNGIDAKHVSEFYNTLDQLKQEGITIILVTHDIGVVADTATEVACLNKHLHF-HGTTDEFKSLDEVEISKIYGHPVRFVDHQHNRECCN
4YMU Chain:J ((15-222))
-----------------EVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNI--NKVRQKVGMVFQHFNL-FPHLTAIENITLAPV-KVKKM----NKKEAEELAVDLLAKVGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEE------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122678 for 1533 contacts (-80.0/contact) +
2D Compatibility (PS) -21398 + (NN) -7619 + (LL) 3524
1D Compatibility (HY) -19600 + (ID) 3800
Total energy: -171571.0 ( -111.92 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_4YMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMU-query.scw
PDB file :
Tito_Scwrl_4YMU.pdb
: