Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGIIGAMEEEVTILKNKLTQLSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADATAFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL
4F3K Chain:A ((19-245))
-IGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDETRYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVETLVQKL
General information:
TITO was launched using:
RESULT:
Template:
4F3K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134008 for 2031 contacts (-66.0/contact) +
2D Compatibility (PS) -24776 + (NN) -10104 + (LL) 208
1D Compatibility (HY) -24800 + (ID) 6100
Total energy: -199580.0 ( -98.27 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_4F3K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F3K-query.scw
PDB file :
Tito_Scwrl_4F3K.pdb
: