Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDDLNKKYLIDLHQHQNSSIEVLREFAEGNEV-PIVDRLTLDLIKQL----IRMNNVKNILEIGTAIGYSSMQFA-SISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV-----NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKGE
3C3Y Chain:A ((37-233))
----------------------LKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFC----
General information:
TITO was launched using:
RESULT:
Template:
3C3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117993 for 1500 contacts (-78.7/contact) +
2D Compatibility (PS) -19647 + (NN) -2552 + (LL) 1744
1D Compatibility (HY) -7600 + (ID) 2650
Total energy: -148698.0 ( -99.13 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_3C3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C3Y-query.scw
PDB file :
Tito_Scwrl_3C3Y.pdb
: