Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKGTTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYFGSSGQHSSYFERYLYPIKE
4AE5 Chain:B ((1-165))
MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKGTTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYFG---QHSSYFERYLYPI--
General information:
TITO was launched using:
RESULT:
Template:
4AE5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68939 for 1347 contacts (-51.2/contact) +
2D Compatibility (PS) -17582 + (NN) -7830 + (LL) -60
1D Compatibility (HY) -23200 + (ID) 8050
Total energy: -125661.0 ( -93.29 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4AE5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AE5-query.scw
PDB file :
Tito_Scwrl_4AE5.pdb
: