Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
2Y0N Chain:E ((551-594))
------PEVTSFFPESLLITPFLPVVAFGRPLPKLAPQNFELPWL-----
General information:
TITO was launched using:
RESULT:
Template:
2Y0N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2839 for 98 contacts (29.0/contact) +
2D Compatibility (PS) -4116 + (NN) -1104 + (LL) 380
1D Compatibility (HY) -2800 + (ID) 350
Total energy: -5151.0 ( -52.56 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_2Y0N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y0N-query.scw
PDB file :
Tito_Scwrl_2Y0N.pdb
: