Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHD-IKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELF-EATDDFDYIVAMDQSNVDNIKSIN---PNLKGQLFKLLEFSNMEESDVPDPYYTN--NFEGVYDMVLSSCDNLIDYIVKDANLKEG
2P4U Chain:A ((11-157))
---VLFVCLGNICRSPIAEAVFRKLVTDEKVSDNWAIDSSAVSDWNVGRPPDPRAVSCLRNHGISTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEVVYQQCLRCCKAFLE-----------
General information:
TITO was launched using:
RESULT:
Template:
2P4U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88535 for 1170 contacts (-75.7/contact) +
2D Compatibility (PS) -14875 + (NN) -7996 + (LL) 1036
1D Compatibility (HY) -13200 + (ID) 2500
Total energy: -126070.0 ( -107.75 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_2P4U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P4U-query.scw
PDB file :
Tito_Scwrl_2P4U.pdb
: