Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVAAITGRINKAKIPTHVEIEKKKYKLDKDSVILLEQIRTLDKKRLKEKLTYLSDDKMKEVDNALMISLGLNAVAHQKN
3NFC Chain:A ((10-81))
----GDLIWVDFD---------HRPAVVLSPFMYNNKTGMCLCVPCT--TQSKGYPFEVVLSG--------GVALADQVKSI--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3NFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41550 for 331 contacts (-125.5/contact) +
2D Compatibility (PS) -6181 + (NN) 280 + (LL) 3548
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -49353.0 ( -149.10 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_3NFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NFC-query.scw
PDB file :
Tito_Scwrl_3NFC.pdb
: