Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDKYYRSAYMNVDLNAVASNFK-VFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKLDTGMGRLGIK-DTNTYQEVIEIIQQYEQLVFEGVFTHFACADEPGDMTT----EQYQRFKDMVNEA-IKPEYIHCQNSAGSLLMDCQ--FCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSFVNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLCNLSRRLPRIYHDGDQRFVTNELLK |
| 4LUS Chain:B ((9-383)) | ---------WAEINLDNLRFNLNNIKNLLEEDIKICGVIKADAYGHGAVEVAKLLEKEKVDYLAVARTAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQK-INEIAKSLGEKACVHVKIDS-----GFQPNEESVQEIIEL-NKLEYIDLEGMFTHFATADE---EYTYKQANNYKFMSDKLDEAGVKIAIKHVSNSAA--IMDCPDLRLNMVRAGIILYGHYPSDDVF-KDRLELRPAMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIATVPIGYADGFTRIQKNPKVLIKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFG---EGEVTAERIAKDLGTINYEVLCMISRRVDRVYMENNELVQINSYL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LUS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257722 for 2918 contacts (-88.3/contact) +
2D Compatibility (PS) -37922 + (NN) -6496 + (LL) 1064
1D Compatibility (HY) -31200 + (ID) 6900
Total energy: -339176.0 ( -116.24 by residue)
QMean score : 0.536
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