Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRPEKIQNVVKLLSSLGVNIKKTKSRLDIINTLPASNKVSHELK
1UD2 Chain:A ((80-98))
---KAQLERAIGSLKSNDINVY-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1UD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3541 for 70 contacts (-50.6/contact) +
2D Compatibility (PS) -2018 + (NN) -933 + (LL) 1792
1D Compatibility (HY) -800 + (ID) 150
Total energy: -5650.0 ( -80.71 by residue)
QMean score : 0.944
(partial model without unconserved sides chains):
PDB file :
Tito_1UD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UD2-query.scw
PDB file :
Tito_Scwrl_1UD2.pdb
: