Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLVTATTLTAGIGTALVGQAHHADAAENYTNYNNYNYNTTQTTTTTTTTTTTSSISHSGNLYTAGQCTWYVYDKVGG---EIGSTWGNANNWAAAAQ--------GAGFTV-----NHTPSKGAILQSSE---GPFGHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTISASEAGNYNYIHI
2VOB Chain:A ((50-201))
-----------------------------------------------------------NIFFGFKYQCVEFARRWLLVRKGLLLPDVNWACHIFQLKEVRDAATTESFAVLQVRNGTTTKPEADALLVYPSTDANPVGHVGTITEVGD-DYVCVADQNYRF-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2VOB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33564 for 519 contacts (-64.7/contact) +
2D Compatibility (PS) -8835 + (NN) -4052 + (LL) 4188
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -46963.0 ( -90.49 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_2VOB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VOB-query.scw
PDB file :
Tito_Scwrl_2VOB.pdb
: