Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKSINHICFSVRNLNDSIHFYRDILLGKLLLTGKKTAYFELAGLWIALNEEKDIPRNEIHFSYTHIAFTIDDSEFKYWHQRLKDNNVNILEGRVRDIRDRQSIYFTDPDGHKLELHTGTLENRLNYYKEAKPHMTFYK
4JD1 Chain:A ((2-139))
MLQGINHICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWIALNVEEDIPRNEIKQSYTHMAFTVTNEALDHLKEVLIQNDVNILPGRERDERDQRSLYFTDPDGHKFEFHTGTLQNRLEYYKEDKKHMTFY-
General information:
TITO was launched using:
RESULT:
Template:
4JD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60963 for 865 contacts (-70.5/contact) +
2D Compatibility (PS) -14573 + (NN) -569 + (LL) 64
1D Compatibility (HY) -16800 + (ID) 4500
Total energy: -97341.0 ( -112.53 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_4JD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JD1-query.scw
PDB file :
Tito_Scwrl_4JD1.pdb
: