Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGLVIEHVTKRF--GKMTAVNDISLELESGKMLGFLGRNGAGKTTTFRMILGLSEPTEGHITY-------NGKKLDKTMYNRIGYLPEERGLHGKLTVEEELKYLATLKGMSKTEIQQQISYWLERFDITENRKKRIDSLSKGNQQKIQLLASMLHKPELLILDEPFSGLDPVNVELLKEAVKDLND-WGSTIVYSSHRMEHVEELCDDVCILDKGQLV-------------------VSGDINHVRASNGNKKVVIESETTLPDLTNIRGI--IHSENMKQGLQLTIENEDVAKDIYQVVAHQGYVKRFQVVEPSLQDIFIEKVGGKDA |
1OXV Chain:A ((4-302)) | --IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKL-------SKDVIKDDSWILVGKGKVK---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OXV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91919 for 1957 contacts (-47.0/contact) +
2D Compatibility (PS) -28115 + (NN) -3895 + (LL) 2276
1D Compatibility (HY) -19200 + (ID) 4250
Total energy: -145103.0 ( -74.15 by residue)
QMean score : 0.451
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