Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFNQFENQNFFNGNPSDTFKDLGKQVFNYFSTPSFVTNIYETDELYYLEAELAGVNKEDISIDFNN-NTLTIQATRSAKYKSEQLILDERNFESLMRQFDFEAVDKQHITASFENGLLTITLPKIKPSNETTSSTSIPIS
3VQL Chain:A ((27-113))
-------------------------------------VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIP-----------------
General information:
TITO was launched using:
RESULT:
Template:
3VQL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52306 for 507 contacts (-103.2/contact) +
2D Compatibility (PS) -9014 + (NN) 979 + (LL) 1692
1D Compatibility (HY) -7600 + (ID) 1150
Total energy: -67399.0 ( -132.94 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_3VQL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VQL-query.scw
PDB file :
Tito_Scwrl_3VQL.pdb
: