Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPA-ETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
3GP5 Chain:A ((9-236))
MYKLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPY-ADPRYAKVPREQLPLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNGVPLVYELDESLTPIRHYYL
General information:
TITO was launched using:
RESULT:
Template:
3GP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83814 for 1873 contacts (-44.7/contact) +
2D Compatibility (PS) -23993 + (NN) -5070 + (LL) 176
1D Compatibility (HY) -23200 + (ID) 5700
Total energy: -141601.0 ( -75.60 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_3GP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP5-query.scw
PDB file :
Tito_Scwrl_3GP5.pdb
: